PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pbr019264.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Pyrus
Family ZF-HD
Protein Properties Length: 376aa    MW: 41810.1 Da    PI: 8.5094
Description ZF-HD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pbr019264.1genomeCPETRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1ZF-HD_dimer40.18.6e-131121353659
  ZF-HD_dimer  36 gtaaalkCaACgCHRnFHRrevee 59 
                   ++++lkCaACgCHRnFHRr++e+
  Pbr019264.1 112 XDPTSLKCAACGCHRNFHRRDPED 135
                  5799****************9875 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5152310.70766132IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
ProDomPD1257742.0E-6113139IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
PfamPF047707.4E-9113133IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
SuperFamilySSF466897.17E-16236296IPR009057Homeodomain-like
TIGRFAMsTIGR015655.0E-24237292IPR006455Homeodomain, ZF-HD class
Gene3DG3DSA:1.10.10.602.9E-26237296IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 376 aa     Download sequence    Send to blast
MDITPSITTT TNNTASTKSP EADSETPTRI RQPLKPPSSN GVLKRHNPTH HLHHHNIPIT  60
PVVVTYKECL KNXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXDPTSLKCA  120
ACGCHRNFHR RDPEDPVQPN TPATTTHVIE YQPHHRHHPP PPTHPGNRSP SSASPPPISS  180
SYYPSAPHML LALSTAHENA LAGANNNNAV AMPQIVSPSP NARKRFKTKF TQXXXXRFRT  240
KFTQDQKEKM YQFAERVGWK MQKRDEEIVQ EFCNEAGIEK GVLKVWMHNN KNTFSKRDVL  300
NGGAGGRAGS LSRPSSFLLE HSHHHNNGTN GNGNNNDDDE EEDDDQNDNK NGVPNPNHHY  360
QGADGGGNNG SSSSS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wh7_A7e-212372931975ZF-HD homeobox family protein
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009376317.11e-143PREDICTED: zinc-finger homeodomain protein 9
TrEMBLM5WSW15e-70M5WSW1_PRUPE; Uncharacterized protein
STRINGVIT_14s0108g00750.t019e-64(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF19793188
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G28920.16e-44homeobox protein 34